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Position-specific scoring matrix
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#	Item
1	Lecture Notes in Computer Science: Add to Reading List Source URL: i.cs.hku.hk Language: English Molecular genetics Proteins Sequence motif Gene expression DNA binding site Position-specific scoring matrix DNA-binding domain Zinc finger Nucleic acid sequence Biology Bioinformatics DNA
2	Motif Discovery Upper Bound An Upper Bound on the Hardness of Exact Matrix Based Motif Discovery Paul Horton & Wataru Fujibuchi Computational Biology Research Center Tokyo, Japan Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2005-07-08 16:23:24 DNA Science Physics Sequence motif Bioinformatics Position-specific scoring matrix Matrix
3	Biochemistry (Moscow), Vol. 60, No. 8, 1995 GeneBee-NET: Internet-Based Server for Analyzing Biopolymers Structure L. I. Brodsky,1,2 V. V. Ivanov,1 Ya. L. Kalaydzidis,3 A. M. Leontovich,3 V. K. Nikolaev,1 S. I. Feranch Add to Reading List Source URL: www.genebee.msu.su Language: English - Date: 2001-10-11 03:08:30 Computational science Sequence alignment Multiple sequence alignment Nucleic acid sequence Protein secondary structure Smith–Waterman algorithm Position-specific scoring matrix Structural alignment Substitution matrix Bioinformatics Computational phylogenetics Science
4	brief communications pLogo: a probabilistic approach to visualizing sequence motifs Add to Reading List Source URL: arep.med.harvard.edu Language: English - Date: 2013-10-21 05:09:52 Hypothesis testing Sequence motif Statistical inference Position-specific scoring matrix STING P-value Odds Statistical hypothesis testing Bonferroni correction Statistics Bioinformatics Science
5	Challenges Rising from Learning Motif Evaluation Functions Using Genetic Programming Leung-Yau Lo, Tak-Ming Chan, Kin-Hong Lee, Kwong-Sak Leung Department of Computer Science & Engineering The Chinese University of Hong Add to Reading List Source URL: www.cse.cuhk.edu.hk Language: English - Date: 2010-11-07 01:38:21 DNA Sequence motif Gene expression DNA binding site Nucleic acid sequence Position-specific scoring matrix Multiple EM for Motif Elicitation Biology Bioinformatics Science
6	WCCI 2010 IEEE World Congress on Computational Intelligence July, 18-23, [removed]CCIB, Barcelona, Spain CEC IEEE Generic Spaced DNA Motif Discovery Using Genetic Algorithm Add to Reading List Source URL: www.cse.cuhk.edu.hk Language: English - Date: 2010-11-07 01:40:55 DNA binding site Sequence logo DNA-binding domain Position-specific scoring matrix Protein domain Nucleic acid sequence Monad Multiple EM for Motif Elicitation Biology Bioinformatics Sequence motif
7	696 IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOL. 10, Add to Reading List Source URL: www.cs.cuhk.edu.hk Language: English - Date: 2014-03-03 04:18:45 Gene expression Transcription factors Molecular biology TRANSFAC DNA binding site Position-specific scoring matrix Protein domain Consensus sequence Biology Bioinformatics DNA
8	Additional File 4 – The Converge Algorithm Converge attempts to learn DNA sequence motifs present in the upstream regions of co-regulated or co-bound genes in the genome of a species of interest (i.e. a primary genome Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Position-specific scoring matrix Sequence motif Nucleic acid sequence Phylo BLAST Bioinformatics Science Sequence alignment
9	Package ‘seqLogo’ December 1, 2014 Title Sequence logos for DNA sequence alignments Version[removed]Author Oliver Bembom Description seqLogo takes the position weight matrix of a DNA Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-12-02 13:20:13 Sequence logo Sequence motif Matrix PWM Sequence alignment Bioinformatics Science Position-specific scoring matrix
10	Sequence logos for DNA sequence alignments Oliver Bembom Division of Biostatistics, University of California, Berkeley October 28, [removed] Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-10-28 20:45:33 Position-specific scoring matrix Sequence alignment Consensus sequence Nucleic acid sequence Biology DNA Tribes Bioinformatics Science Sequence logo

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